Search returned 105 result(s).

article

Sibaprasad Bhattacharyya, Maren Pink, Mu-Hyun Baik, Jeffrey M. Zaleski Angewandte, "A Unique Approach to Metal-Induced Bergman Cyclization: Long Range Enediyne Activation by Ligand-to-Metal Charge Transfer", Chemie International Edition, vol. 44, pp. 592-595, . 2005.

Xuan Jiang, John C. Bollinger, Mu-Hyun Baik and Dongwhan Lee, "Ligand-assisted Spin Delocalization in Dicopper(I,II) Cores: Use of Bulky Amidnate Ligands to Access Novel Tetra- and Dicopper Clusters", Chemical Communications, . 2005.

Mu-Hyun Baik, Erich W. Baum, Matthew C. Burland and P. Andrew, "Diasteroselective Intermolecular Rhodium-Catalyzed [4+2+2] Carbocyclization Reactions: Computational and Experimental Evidence for the Intermediacy of a New Metallocycle Intermediate", Evans Journal of the American Chemical Society, . 2005.

Tuncay, K., A. Sayyed-Ahmad, L. Jarymowycz and P. Ortoleva, "Mesoscopic theory of multi-phase structures and macromolecule-fluid interactions", Journal of Computational Chemistry, . 2005.

Pryor S., Barthelmie R. and Schoof J, "Inter-annual variability of wind indices over Europe.", Wind Energy, . 2005.

R. Raje, M. Qiao, S. Mukhopadhyay, S. Peng, M. Palakal, & J. Mostafa, "Homogeneous Agent-Based Distributed Information Filtering.", Cluster Computing, . 2005.

M. Palakal, S. Mukhopadhyay, J. Mostafa, R. Raje, S. Mishra, and M. N'Cho, "An Intelligent Biological Information Management System", Bioinformatics, . 2005.

Taraszka, J. A.; Kurulugama, R.; Sowell, R.; Valentine, S. J.; Koeniger, S. L; Miller, D. F.; Kaufman, T. C.; Clemmer, D. E., "Mapping the Proteome of Drosophila melanogaster: Analysis of Embryos and Adult Heads by LC-IMS-MS Methods", Analytical Chemistry, . 2005.

Taraszka, J. A.; Gao, X.; Valentine, S. J.; Koeniger, S. L; Miller, D. F.; Kaufman, T. C.; Clemmer, D. E., "Proteome Profiling for Assessing Diversity: Analysis of Individual Heads of Drosophila melanogaster using LC-Ion Mobility-MS", Analytical Chemistry, . 2005.

Douglas Gregor, Jaakko Järvi, Mayuresh Kulkarni, Andrew Lumsdaine, David Musser, and Sibylle Schupp, "Generic Programming and High-Performance Libraries.", International Journal of Parallel Programming, . 2005.

S. Gottlieb, C. Aubin, C. Bernard, C. DeTar, M. Di Pierro, A. El-Khadra, E.B. Gregory, U.M. Heller, J. Hetrick, A.S. Kronfeld, P.B. Mackenzie, D. Menscher, M. Nobes, M. Okamoto, M.B. Oktay, J. Osborn, J. Simone, R. Sugar, D. Toussaint and H.D. Trottier, "Semileptonic decays of $D$ mesons in three-flavor lattice QCD.", Phys. Rev. Lett., vol. 94, no. 011601, . 2005.

Falguni Basuli, Brad C. Bailey, John Huffman, Mu-Hyun Baik and Daniel J Mindiola, "Terminal and Four-Coordinate Vanadium(IV) Phosphinidene Complexes. A Pseudo Jahn-Teller Effect of Second Order Stabilizing the V-P Multiple Bond", Journal of the American Chemical Society, vol. 126, pp. 1924-1925, . 2004.

Falguni Basuli, Brad C. Bailey, Douglas Brown, John Tomaszewski, John Huffman, Mu-Hyun Baik and Daniel J Mindiola, "Terminal Vanadium-Neopentylidyne Complexes and Intramolecular Wittig Reactions to Generate Azametalacyclohexatrienes", Journal of the American Chemical Society, vol. 126, pp. 10506-10507, . 2004.

Matthew C. Burland, Tara Y. Mayer and Mu-Hyun Baik, "Proton as the Simplest of All Catalysts for [2+2] Cycloadditions: DFT Study of Acid-Catalyzed Imine Metathesis", Journal of Organic Chemistry, vol. 69, pp. 6173-6184, . 2004.

Oleg V, Ozerov, Lori A. Watson, Maren Pink, Mu-Hyun Baik and Kenneth G Caulton, "Terminal Acetylenes React to Increase Unsaturation in [(tBu2PCH2SiMe2)2N]Re(H)4", Organometallics, vol. 23, pp. 4934-4943, . 2004.

Dziarski, R, "Peptidoglycan recognition proteins (PGRPs).", Molecular Immunology, vol. 40, pp. 877-886, . 2004.

Xiaofan Yang and Mu-Hyun Baik, "Electronic Structure of the Water-Oxidation Catalyst [(bpy)2(OHx)RuORu(OHy)(bpy)2]z+: Weak Coupling between the Metal Centers Is Preferred over Strong Coupling", Journal of the American Chemical Society, vol. 126, pp. 13222-13223, . 2004.

Pavlis, G. L., F. L. Vernon, D. Harvey, and D. Quinlan, "The generalized earthquake location (GENLOC) package: A modern earthquake location library", Computers in Geosciences, vol. 20, pp. 1079-1091, . 2004.

Fan, J., A. Navid, K. Tuncay and P. Ortoleva, "Simulating multi-scale cellular reaction-transport processes", Physical Review E, . 2004.

Navid, A. and P. Ortoleva, "Simulated nonlinear dynamics of glycolysis in the protozoan parasite Trypanosoma brucei", Journal of Theoretical Biology, . 2004.

Schoof JT, Pryor SC, "An evaluation of two GCMs: Simulation of North American teleconnection indices and synoptic phenomena", International Journal of Climatology., . 2004.

Pryor SC, Barthelmie RJ, Schoof JT, "The impact of non-stationarities in the climate system on the definition of a normal wind year: A case study from the Baltic.", International Journal of Climatology., . 2004.

Liu, X.; Plasencia, M.; Ragg, S.; Valentine, S. J.; Clemmer, D. E., "Development of High-Throughput Dispersive LC-Ion Mobility-TOFMS Techniques for Analyzing the Human Plasma Proteome", Briefings of Funct. Genomics & Proteomics, vol. 3, pp. 177-186, . 2004.

S. Gottlieb. S. Gottlieb, C. Aubin, C. Bernard, C. DeTar, E. Gregory, U. M. Heller, J. Hetrick, J. Osborn, R. Sugar, and D. Toussaint, "Pion and kaon physics with improved staggered quarks.", Nucl. Phys., vol. B129-130, pp. 227, . 2004.

S. Gottlieb, "Results on improved KS dynamical configurations: spectrum, decay constants, etc.", Nucl. Phys., vol. B 129-130, pp. 17, . 2004.

S. Gottlieb, "Results on improved KS dynamical configurations: spectrum, decay constants, etc.", Nucl. Phys., vol. B 128, pp. 72, . 2004.

S. Gottlieb, C. Aubin, C. Bernard, C. DeTar, E.B. Gregory, U. M. Heller, J.E. Hetrick, J. Osborn, R. Sugar, and D. Toussaint, "Light hadrons with improved staggered quarks: approaching the continuum limit.", Phys. Rev., vol. D 70, no. 9, . 2004.

S. Gottlieb, C. Aubin, C. Bernard, C.T.H. Davies, C. DeTar, A. Gray, E.B. Gregory, J. Hein, U.M. Heller, J.E. Hetrick, G.P. Lepage, Q. Mason, J. Osborn, J. Shigemitsu, R. Sugar, D. Toussaint, H. Trottier, M. Wingate, "First determination of the strange and light quark masses from full lattice QCD", Phys. Rev., vol. D 70, . 2004.

S. Gottlieb, C. Aubin, C. Bernard, C. DeTar, E.B. Gregory, U. M. Heller, J.E. Hetrick, J. Osborn, R. Sugar, and D. Toussaint, "Light pseudoscalar decay constants, quark masses, and low energy constants from three-flavor lattice QCD.", Phys. Rev., vol. D 70, no. 114501, . 2004.

Oktay, E., H.U. Akay, A. Uzun, "A Parallelized 3D Unstructured Euler Solver For Unsteady Aerodynamics.", AIAA Journal of Aircraft, vol. 40, no. 2, pp. 348-354, . 2003.

Dziarski, R, Platt, KA, Gelius, E, Steiner, H, and Gupta, D, "Defect in neutrophil killing and increased susceptibility to infection with non-pathogenic Gram-positive bacteria in peptidoglycan recognition protein-S (PGRP-S)-deficient mice.", Blood, vol. 102, pp. 689-697, . 2003.

Wang, Z-M, Li, X, Cocklin, RR, Wang, M, Wang, M, Fukase, K, Inamura, S, Kusumoto, K, Gupta, D, and Dziarski, R, "Human peptidoglycan recognition protein-L is an N-acetylmuramoyl-L-alanine amidase.", Journal of Biological Chemistry, vol. 278, pp. 49044-49052, . 2003.

P. Ortoleva, E. Berry,Y. Brun, J. Fan, M. Fontus, A. Navid, A. Sayyed-Ahmad, Z. Shreif, F. Stanley, K. Tuncay, E. Weitzke and L. Wu, "Karyote: physico-chemical genome, proteome, metabolome cell modeling system", OMICS: A Journal of Integrative Biology, vol. 7, pp. 169-183., . 2003.

Weitzke, E. and P. Ortoleva, "Simulating cellular dynamics through a coupled transcription, translation, metabolic model", Computational Biology and Chemistry, vol. 27, no. 4-5, pp. 469-481, . 2003.

Jaqaman, K., K. Tuncay and P. Ortoleva, "Density functional theory of orientational order at inferfaces: application to water", Journal of Chemical Physics, . 2003.

Sayyed-Ahmad, A., K. Tuncay and P. Ortoleva, "Toward Automated Cell Model Development through Information Theory", Journal of Physical Chemistry, vol. A 107, pp. 10554-10565., . 2003.

Sayyed-Ahmad, A., Tuncay, K. and P. Ortoleva, "Efficient solution Technique for Solving the Poisson-Boltzmann Equation", Journal of Computational Chemistry, vol. 25, pp. 1068-1074, . 2003.

Schoof JT, Pryor SC, "Evaluation of the NCEP/NCAR reanalysis in terms of synoptic scale phenomena: A case study from the Midwestern USA.", International Journal of Climatology, vol. 23, pp. 1725-1741, . 2003.

Mukhopadhyay, S., C. Tang, J. Huang, M. Yu, and M. Palakal, "A Comparative Study of Genetic Sequence Classification Algorithms", Journal of VLSI Signal Processing-Systems for Signal, Image, and Video Technology, . 2003.

Jaqaman, K. and P. Ortoleva, "New space warping method for the simulation of large-scale macromolecular conformational changes", Journal of Computational Chemistry, vol. 23, no. 1, pp. 484-491, . 2002.

Sriram Krishnan, Randall Bramley, Dennis Gannon, Rachana Ananthakrishnan, Madhusudhan Govindaraju, Aleksander Slominski, Yogesh Simmhan, Jay Alameda, Richard Alkire, Timothy Drews, and Eric Webb, "The XCAT Science Portal.", Journal of Scientific Programming, vol. 10, no. 4, pp. 303--317, . 2002.

Jill Dahlburg, James Corones, Donald Batchelor, Marsha Berger, Randall Bramley, Martin Greenwald, Stephen Jardin, Sergei Krasheninnikov, Alan Laub, William Lokke, Noel Lebouef, John Lindl, Marshall Rosenbluth, David Ross, Dalton Schnack, and Harold Weitzn, "Fusion Simulation Project: Integrated Simulation and Optimization of Magnetic Fusion Systems.", Journal of Fusion Energy, vol. 20, no. 4, pp. 135--196, December. 2002.

Dennis Gannon, Randall Bramley, Geoffrey Fox, Shava Smallen, Al Rossi, Rachana Ananthakrishnan, Felipe Bertrand, Ken Chiu, Matt Farrellee, Madhu Govindaraju, Sriram Krishnan, Lavanya Ramakrishnan, Yogesh Simmhan, Alek Slominski, Yu Ma, Caroline Olariu, an, "Programming the Grid: Distributed Software Components, P2P and Grid Web Services for Scientific Applications.", Cluster Computing, vol. 5, no. 3, pp. 325--336, July. 2002.

conference

Leah Sandvoss and Mu-Hyun Baik, "A combinatorial DFT study of how cisplatin binds to purine bases.", . 2005.

Ana Maguitman, Filippo Menczer, Heather Roinestad and Alessandro Vespignani, "Algorithmic Detection of Semantic Similarity.", . 2005.

Douglas Gregor and Andrew Lumsdaine, "Lifting Sequential Graph Algorithms for Distributed-Memory Parallel Computation.", . 2005.

Felipe Bertrand, Randall Bramley, Kostadin B. Damevski, James A. Kohl, David E. Bernholdt, Jay W. Larson, and Alan Sussman, "Data Redistribution and Remote Method Invocation in Parallel Component Architectures.", , 4-8 April. 2005.

Lauer, Daniel, George Turner, "The AVIDD Linux Clusters", , March. 2004.

Akay, Hasan, "Advances in Parallel Metacomputing of Solid-Fluid Interaction Problems", , March. 2004.

Falguni Basuli, Uriah J. Kilgore, Brad C. Bailey, Xile Hu, Karsten Meyer, Maren Pink, John C. Huffman, Mu-Hyun Baik, Daniel J. Mindiola, "Four-coordinate alkylidene, alkylidyne and phosphinidene complexes of vanadium: One and two-electron oxidatively-induced a-hydrogen abstraction reactions.", . 2004.

Falguni Basuli, Brad C. Bailey, John C. Huffman, Mu-Hyun Baik, Daniel J. Mindiola, "Probing the terminal alkylidene, imide, and phosphinidene functionalities of four-coordinate Ti(IV) and V(IV) complexes.", . 2004.

Leah Sandvoss and Mu-Hyun Baik, "A Combinatorial DFT Study of How Cisplatin Binds to Purine Bases", . 2004.

Felipe Bertrand, Randall Bramley, "DCA: A Distributed CCA Framework Based on MPI.", , 26--30 April. 2004.

Turner, George, Peng Wang, et al, "1 TeraFLOPS achieved with distributed Linux cluster", , November. 2003.

Stewart, Craig, "Global analysis of arthropod evolution", , November. 2003.

Stewart, Craig, "Computational Biology", , November. 2003.

Papakhian, Mary, Daniel Lauer, Stephen Simms, George Turner, "Linux in High Performance Computing at IU", , April. 2003.

Shankar, Anurag, "Handling the Data Deluge at Indiana University", , October. 2003.

Arenson, Andrew, "The Centralized Life Sciences Data (CLSD) Service", , October. 2003.

Arenson, Andrew, "The Centralized Life Sciences Data (CLSD) Service", , October. 2003.

Shankar, Anurag, "High Performance Storage at Indiana University", , September. 2003.

Shankar, Anurag, "High Performance Storage at Indiana University", , October. 2003.

Arenson, Andrew, "The Centralized Life Sciences Data Service (CLSD) and supported applications at Indiana University", , September. 2003.

Hancock, David, "High Performance Computing Resources at IU", , July. 2003.

Simms, Stephen, "High Performance Computing Resources at IU", , July. 2003.

Shankar, Anurag, "HPSS at Indiana University: A Site Report", , June. 2003.

Arenson, Andrew, "The Centralized Life Sciences Data (CLSD) Service", , June. 2003.

Susan Tennant, Clinton Koch, Dr Mathew Palakal, Dr Pauline Baker, Jeffrey Rogers, "Negotiating Virtual and Physical Museum Space", , Oct. 2003.

H.U. Akay, E. Oktay, Z. Li, and X. He,, "Parallel Computing for Aeroelasticity Problems", , June 22-25. 2003.

Umamaheswaran, D, J Huang, M. Palakal, and S. Suyut, "Video Scene Analysis Using Best Basis Wavelets and Learning Strategies", . 2002.

Huang, J., D. Umamaheswaran, and M. Palakal,, "Video Indexing and Retrieval for Archeological Digital Library", , July. 2002.

Mukhopadhyay, S., C. Tang, J. Huang, M. Yu, and M. Palakal,, "A Comparative Study of Genetic Sequence Classification Algorithms", . 2002.

Lavanya Ramakrishnan, Helen Rehn, Jay Alameda, Rachana Ananthakrishnan, Madhusudhan Govindaraju, Aleksander Slominski, Kay Connelly, Von Welch, Dennis Gannon, Randall Bramley, and Shawn Hampton, "An Authorization Framework for a Grid Based Component Architecture.", , November. 2002.

inbook

Stewart, C.A., D. Hart, R.W. Sheppard, H. Li, R. Cruise, V. Moskvin, L. Papiez. 2004. "Parallel computing: software technology, algorithms, architectures & applications." volume 13. series Advances in Parallel Computing. Parallel computing in biomedical research and the search for peta-scale biomedical applications.:719-716. Elsevier. Oxford.

Tuncay, K. and P. Ortoleva. 2002. "Resource Recovery, Confinement, and Remediation of Environmental Hazards, Institute of Mathematics and its Applications" volume 131. Probability functionals, homogenization and comprehensive reservoir simulators.:161-178. Springer-Verlag. New York.

incollection

Wang P.,Turner G.,Simms S.,Hart D.,Papakhian M.,and Stewart A. C.,. 2005. Part 4, Cluster and Grid Computing, High Performance Computing, Paradigm and Infrastructure John Wiley & Sons.

R.U. Payli, E. Yilmaz, A. Ecer, H.U. Akay, and S. Chien,. 2005. Parallel CFD 2004 Elsevier Science.

S.Y. Chien, L.Giavelli, A. Ecer, and H.U. Akay. 2005. Parallel CFD 2004 Elsevier Science.

H.U. Akay, E. Oktay, X. He, and R.U. Payli,. 2004. Parallel CFD 2003 Elsevier Science.

E. Yilmaz, A. Ecer, H.U. Akay, R.U. Payli, S. Chien, and Y. Wang,. 2004. Parallel CFD 2003

S. Chien, Y. Wang, A. Ecer, and H.U. Akay,. 2003. Parallel CFD 2003 Elsevier Science.

E. Oktay and H.U. Akay,. 2003. Parallel CFD 2002 Elsevier Science.

E. Yilmaz, A. Ecer, H.U. Akay, S. Chien, and R.U. Payli,. 2003. Parallel CFD 2002 Elsevier Science.

10.S. Chien, J. Zhou, A. Ecer, and H.U. Akay,. 2003. Parallel CFD 2002 Elsevier Science.

inproceedings

Stewart, C.A. R. Keller, R. Repasky, M. Hess, D. Hart, M. Mueller, R. Sheppard, U. Woessner, M. Aumueller, Huian Li, D.K. Berry, J. Colbourne, "A global grid for analysis of arthropod evolution.", , pp. 328-337., November. 2004.

Edgar Gabriel, Graham E. Fagg, George Bosilca, Thara Angskun, Jack J. Dongarra, Jeffrey M. Squyres, Vishal Sahay, Prabhanjan Kambadur, Brian Barrett, Andrew Lumsdaine, Ralph H. Castain, David J. Daniel, Richard L. Graham, and Timothy S. Woodall, "Open MPI: Goals, Concept, and Design of a Next Generation MPI Implementation.", , September. 2004.

Jeffrey M. Squyres and Andrew Lumsdaine, "The Component Architecture of Open MPI: Enabling Third-Party Collective Algorithms.", , July. 2004.

T.S. Woodall, R.L. Graham, R.H. Castain, D.J. Daniel, M.W. Sukalski, G.E. Fagg, E. Gabriel, G. Bosilca, T. Angskun, J.J. Dongarra, J.M. Squyres, V. Sahay, P. Kambadur, B. Barrett, and A. Lumsdaine, "TEG: A High-Performance, Scalable, Multi-Network Point-to-Point Communications Methodology.", , September. 2004.

T.S. Woodall, R.L. Graham, R.H. Castain, D.J. Daniel, M.W. Sukalski, G.E. Fagg, E. Gabriel, G. Bosilca, T. Angskun, J.J. Dongarra, J.M. Squyres, V. Sahay, P. Kambadur, B. Barrett, and A. Lumsdaine, "Open MPI's TEG Point-to-Point Communications Methodology: Comparison to Existing Implementations.", , September. 2004.

S. Gottlieb, M. Okamoto, C. Aubin, C. Bernard, C. DeTar, M. Di Pierro, A.X. El-Khadra, E.B. Gregory, U.M. Heller, J. Hetrick, A.S. Kronfeld, P.B. Mackenzie, D.P. Menscher, M. Nobes, M.B. Oktay, J. Osborn, J.N. Simone, R. Sugar, D. Toussaint and H.D. Trott, "Semileptonic $D ightarrow pi/K$ and $B ightarrow pi/D$ decays in 2+1 flavor lattice QCD.", . 2004.

John Mugler, Thomas Naughton, Stephen L. Scott, Brian Barrett, Andrew Lumsdaine, Jeffrey M. Squyres, Benoît des Ligneris, Francis Giraldeau, and Chokchai Leangsuksun, "OSCAR Clusters.", , July. 2003.

Jeffrey M. Squyres and Andrew Lumsdaine, "A Component Architecture for LAM/MPI.", , October. 2003.

Jeffrey M. Squyres and Andrew Lumsdaine, "A Component Architecture for LAM/MPI.", , June. 2003.

Felipe Bertrand, Kenneth Chiu, Yongquan Yuan, and Randall Bramley, "An Approach to Parallel MxN Communication.", , October. 2003.

Madhusudhan Govindaraju, Sriram Krishnan, Kenneth Chiu, Aleksander Slominski, Dennis Gannon, Randall Bramley, "Merging the CCA Component Model with the OGSI Framework.", , March. 2003.

M. Palakal, M. Stephens, S. Mukhopadhyay, R. Raje, and S. Rhodes, "A Multi-level Text Mining Method to Extract Biological Relationships,", , pp. 97--108., August. 2002.

Kenneth Chiu, Madhusudhan Govindaraju, Randall Bramley, "Investigating the Limits of SOAP Performance for Scientific Computing.", , July. 2002.

phdthesis

Jeffrey M. Squyres, "A Component Architecture for the Message Passing Interface (MPI): The Systems Service Interface (SSI)", PhD Thesis, University of Notre Dame, Notre Dame, IN, 2004.

Seminar/Talk

Arenson, Andrew. 2003. "Resources for Bioinformatics at Indiana University" Presented to School of Informatics class, IUPUI. Seminar/Talk.

techreport

Yu Ma, Randall Bramley, and Sun Kim. 2005. "A Data Management Architecture for Computational Biology."Num. TRxxx,. Department of Computer Science, Indiana University.

Felipe Bertrand, Randall Bramley, Kostadin B. Damevski, James A. Kohl, David E. Bernholdt, Jay W. Larson, and Alan Sussman. 2005. "Data Redistribution and Remote Method Invocation in Parallel Component Architectures"Num. TR604. Department of Computer Science, Indiana University..

Douglass Post, Donald Batchelor, Randall Bramley, John R. Cary, Ronald Cohen, Phillip Colella, Stephen Jardin. 2004. "Report of the Fusion Simulation Project Steering Committee"Num. LA-UR-04-5930.. Los Alamos Nation Laboratory.

Randall Bramley, Fang Liu, and George Turner. 2004. "An Instrument/Sensor Analysis of the MMSF Automated Photometric Telescope."Num. 597. Computer Science Department Indiana University.

Douglas Gregor and Sibylle Schupp. 2003. "Retaining Path-Sensitive Relations across Control-Flow Merges."Num. 03-15. Rensselaer Polytechnic Institute.

Randall Bramley, Kenneth Chiu, John C. Huffman, Kia Huffman, and Donald F. 2003. "McMullen Instruments and Sensors as Network Services: Making Instruments First Class Members of the Grid."Num. 588. Computer Science Department, Indiana University..

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